3GOLD: optimized Levenshtein distance for clustering third-generation sequencing data

BMC Bioinformatics

Table 2 Characteristics of clusters formed on ONT MinION R9.4.1 biological data

Clustering tool	Total clustered	Singletons	Qualified clusters	Cluster size range	Time to cluster
3GOLD	9488	10	96	100–67	3,830.411
SLD	6801	2199	96	92–22	69,712.716
LD	4192	3259	91	70–25	72,766.322
Starcode	3735	3463	88	70–21	0.174
CD-HIT-EST	4829	1827	95	85–24	2.370
DNACLUST	995	4045	35	49–20	4.997

ISSN: 1471-2105