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Table 2 Comparison between ALGAEFUN with MARACAS and other functional enrichment analysis tools

From: ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS

 

Algal functional annotation tool

AgriGO

ChlamyNET

ALGAEFUN with MARACAS

Gene sets as input

YES

YES

YES

YES

Genomic loci as input

NO

NO

NO

YES

GO enrichment

YES

YES

YES

YES

KEGG pathways enrichment

YES

NO

NO

YES

Several microalgae

NO

YES

NO

YES

Statistical test

Hypergeometric tests

Fisher’s exact test

Fisher’s exact test

Hypergeometric tests