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Table 2 Performance (F1 score) of BERT models on the ChemProt, DDI, and PPI datasets

From: Investigation of improving the pre-training and fine-tuning of BERT model for biomedical relation extraction

Model PPI DDI ChemProt
BioBERT 81.0 79.0 75.3
SciBERT 78.8 78.7 74.4
BlueBERT 71.9 76.8 71.2