Model | PPI | DDI | ChemProt | ||||||
---|---|---|---|---|---|---|---|---|---|
P | R | F | P | R | F | P | R | F | |
BioBERT | 9.0 | 83.3 | 81.0 | 9.9 | 8.1 | 9.0 | 4.3 | 6.3 | 5.3 |
BioBERT_SLL_Att | 80.7 | 84.4 | 82.5 | 81.3 | 80.1 | 80.7 | 76.5 | 77.1 | 76.8 |
BioBERT_SLL_Att (+P/G) | \({\mathbf{83.1 }}\) | \( {\mathbf{84.7 }}\) | \( {\mathbf{83.8 }}\) | 80.4 | 79.7 | 80.0 | 78.4 | 75.1 | 76.7 |
BioBERT_SLL_Att (+D) | 81.5 | 84.5 | 82.9 | \( {\mathbf{82.6 }}\) | \( {\mathbf{81.2 }}\) | \( {\mathbf{81.9 }}\) | 76.8 | 74.7 | 75.7 |
BioBERT_SLL_Att (+CP) | 82.5 | 84.2 | 83.3 | 81.7 | 77.0 | 79.3 | \( {\mathbf{78.9 }}\) | \( {\hbox {75.2}}\) | \( {\mathbf{77.0 }}\) |
PubMedBERT | 80.1 | 84.3 | 82.1 | 82.6 | 81.9 | 82.3 | 78.8 | 75.9 | 77.3 |
PubMedBERT_SLL_Att | 81.3 | 85.0 | 83.1 | 84.3 | 82.7 | 83.5 | 78.3 | 77.6 | 77.9 |
PubMedBERT_SLL_Att (+P/G) | \( {\hbox {81.1}}\) | \( {\mathbf{87.1 }}\) | \( {\mathbf{84.0 }}\) | 83.6 | 80.6 | 82.1 | 79.8 | 77.0 | 78.4 |
PubMedBERT_SLL_Att (+D) | 81.4 | 84.5 | 82.9 | \( {\hbox {84.9}}\) | \( {\mathbf{83.2 }}\) | \( {\mathbf{84.0 }}\) | 79.5 | 75.9 | 77.7 |
PubMedBERT_SLL_Att (+CP) | 81.4 | 85.7 | 83.4 | 85.0 | 81.4 | 83.2 | \( {\hbox {79.7}}\) | \( {\mathbf{77.7 }}\) | \( {\mathbf{78.7 }}\) |