Fig. 1
From: Impact of gene annotation choice on the quantification of RNA-seq data
Concordance and differences between gene annotations. A Venn diagram showing genes that are common or unique in the Ensembl, RefSeq-NCBI and RefSeq-Rsubread annotations. B Boxplots showing the distribution of effective gene lengths (\(log_2\) scale) in each annotation. C Boxplots showing the differences in effective lengths of common genes between each pair of annotations. Only genes that have a one-to-one mapping between the two annotations being compared were included in the analysis. Values shown in the plots are the ratio of effective lengths of the same gene from two different annotations (\(log_2\) scale). D The size of transcriptome calculated from each annotation. Shown are the sum of effective gene lengths in each annotation