Skip to main content
Fig. 2 | BMC Bioinformatics

Fig. 2

From: Pentad: a tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments

Fig. 2

Pentad accurately calculates averaged compartments and detects their dynamics. A Cis-pentads for mouse cells with conditional knock-out (KO) of cohesin loading factor (NIPBL; data from Schwarzer et al. [18]). B Cis-pentads for human cells with knock-out (KO) of cohesin releasing factor (WAPL; data from Haarhuis et al. [17]). Quantification of compartment strength for different types of compartment interactions is shown to the right with box plots. **, P-value ≤ 0.01; ***, P-value ≤ 0.001; ****, P-value ≤ 0.0001, Wilcoxon signed-rank test

Back to article page