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Table 5 Models with the highest testing accuracy for each dataset

From: Towards a robust out-of-the-box neural network model for genomic data

Model

Splice

Histone

Motif discovery

CNN-Nguyen

Original (two 2D layer)

Extra 1D layer

Extra 1D layer

CNN-Zeng

Four layers L2-reg

Four layers L2-reg

Four layers L2-reg

DeepRAM

RNN-Embed

RNN-OneHot

RNN-OneHot

LSTM-layer

SGD

Adam

Adam

LSTM-AE

Batch size 1024

Batch size 1024

Batch size 1024

doc2vec

Embed size 150

Embed size 50

Embed size 150