Table 1 Parameters of sequences used for experiments
From: Algorithm for DNA sequence assembly by quantum annealing
datasetA | ||||
|---|---|---|---|---|
Overlap length | Length | Coverage | % of errors | Average read length |
2300 | 30,000 | 5 | 0 | 3000 |
2500 | 30,000 | 5 | 0 | 3000 |
2700 | 30,000 | 5 | 0 | 3000 |
2300 | 30,000 | 5 | 0.5 | 3000 |
2500 | 30,000 | 5 | 0.5 | 3000 |
2700 | 30,000 | 5 | 0.5 | 3000 |
2300 | 30,000 | 5 | 1.0 | 3000 |
2500 | 30,000 | 5 | 1.0 | 3000 |
2700 | 30,000 | 5 | 1.0 | 3000 |
2300 | 30,000 | 5 | 1.5 | 3000 |
2500 | 30,000 | 5 | 1.5 | 3000 |
2700 | 30,000 | 5 | 1.5 | 3000 |
2300 | 15,000 | 10 | 0 | 3000 |
2500 | 15,000 | 10 | 0 | 3000 |
2700 | 15,000 | 10 | 0 | 3000 |
2300 | 15,000 | 10 | 0.5 | 3000 |
2500 | 15,000 | 10 | 0.5 | 3000 |
2700 | 15,000 | 10 | 0.5 | 3000 |
2300 | 15,000 | 10 | 1.0 | 3000 |
2500 | 15,000 | 10 | 1.0 | 3000 |
2700 | 15,000 | 10 | 1.0 | 3000 |
2300 | 15,000 | 10 | 1.5 | 3000 |
2500 | 15,000 | 10 | 1.5 | 3000 |
2700 | 15,000 | 10 | 1.5 | 3000 |
2300 | 10,000 | 15 | 0 | 3000 |
2500 | 10,000 | 15 | 0 | 3000 |
2700 | 10,000 | 15 | 0 | 3000 |
2300 | 10,000 | 15 | 0.5 | 3000 |
2500 | 10,000 | 15 | 0.5 | 3000 |
2700 | 10,000 | 15 | 0.5 | 3000 |
2300 | 10,000 | 15 | 1.0 | 3000 |
2500 | 10,000 | 15 | 1.0 | 3000 |
2700 | 10,000 | 15 | 1.0 | 3000 |
2300 | 10,000 | 15 | 1.5 | 3000 |
2500 | 10,000 | 15 | 1.5 | 3000 |
2700 | 10,000 | 15 | 1.5 | 3000 |
datasetB | ||||
|---|---|---|---|---|
Sequence name | Length | Coverage | % of errors | Average read length |
Covid19 | 29,903 | 10 | 0.33 | 5000 |
lambda_phage | 48,502 | 10 | 0.33 | 5000 |
NC_000913_cov5 | 50,000 | 5 | 0.33 | 5000 |
NC_000913_cov10 | 50,000 | 10 | 0.33 | 5000 |
NC_000913_cov15 | 50,000 | 15 | 0.33 | 5000 |