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Table 4 Results on NCBI catalogs depending on sequencing technology

From: MALVIRUS: an integrated application for viral variant analysis

Technology

MALVIRUS

bcftools

lofreq

 

Precision

Recall

Precision

Recall

Precision

Recall

ILL

.991

.961

.942

.899

.775

.817

ONT

.792

.946

.731

.980

.680

.845

  1. We report the precision and recall achieved by MALVIRUS, BCFtools, and lofreq in calling the variations available in the default catalog (NCBI catalog, Pipeline B, \(min_{lin} = 50\), \(max_{lin} = 100\)). The results are shown in terms of average over all the considered samples aggregated by sequencing technology. We highlighted in bold the best results
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BMC Bioinformatics

ISSN: 1471-2105

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