From: A comparison of topologically associating domain callers over mammals at high resolution
 | H3K9me3 | H3K4me3 | H3K36me3 | RAD21 | SMC3 | CTCF | H3K9me3 | H3K4me3 | H3K36me3 | RAD21 | SMC3 | CTCF |
---|---|---|---|---|---|---|---|---|---|---|---|---|
With corner dot (extrusion loop) | Without corner dot | |||||||||||
Armatus | 0.451 | 0.342 | 0.353 | 0.531 | 0.535 | 0.565 | 0.221 | 0.112 | 0.123 | 0.301 | 0.305 | 0.335 |
Arrowhead | 0.531 | 0.392 | 0.409 | 0.599 | 0.617 | 0.356 | 0.301 | 0.162 | 0.179 | 0.369 | 0.387 | 0.426 |
CaTCH | 0.428 | 0.324 | 0.339 | 0.569 | 0.597 | 0.436 | 0.198 | 0.094 | 0.109 | 0.339 | 0.367 | 0.206 |
Constrained HAC | 0.595 | 0.441 | 0.468 | 0.649 | 0.712 | 0.574 | 0.365 | 0.211 | 0.238 | 0.419 | 0.482 | 0.344 |
CHDF | 0.578 | 0.367 | 0.379 | 0.537 | 0.551 | 0.585 | 0.248 | 0.137 | 0.149 | 0.307 | 0.321 | 0.355 |
ClusterTAD | 0.519 | 0.385 | 0.401 | 0.669 | 0.703 | 0.561 | 0.289 | 0.155 | 0.171 | 0.439 | 0.473 | 0.331 |
deDoc | 0.543 | 0.411 | 0.427 | 0.599 | 0.612 | 0.614 | 0.313 | 0.181 | 0.197 | 0.369 | 0.382 | 0.384 |
DI | 0.573 | 0.414 | 0.436 | 0.731 | 0.756 | 0.581 | 0.343 | 0.184 | 0.206 | 0.501 | 0.536 | 0.351 |
EAST | 0.456 | 0.351 | 0.361 | 0.562 | 0.586 | 0.652 | 0.226 | 0.121 | 0.131 | 0.332 | 0.356 | 0.422 |
GMAP | 0.485 | 0.358 | 0.372 | 0.551 | 0.609 | 0.611 | 0.255 | 0.128 | 0.142 | 0.321 | 0.379 | 0.381 |
GRiNCH | 0.495 | 0.362 | 0.375 | 0.557 | 0.614 | 0.615 | 0.252 | 0.129 | 0.144 | 0.324 | 0.381 | 0.382 |
HiCExplorer | 0.571 | 0.434 | 0.476 | 0.664 | 0.659 | 0.615 | 0.361 | 0.204 | 0.236 | 0.434 | 0.429 | 0.385 |
HiCKey | 0.531 | 0.377 | 0.399 | 0.675 | 0.705 | 0.548 | 0.301 | 0.147 | 0.171 | 0.445 | 0.475 | 0.317 |
HiCseg | 0.528 | 0.376 | 0.398 | 0.672 | 0.702 | 0.545 | 0.298 | 0.146 | 0.168 | 0.442 | 0.472 | 0.315 |
IC-Finder | 0.539 | 0.398 | 0.416 | 0.658 | 0.656 | 0.628 | 0.309 | 0.168 | 0.186 | 0.428 | 0.426 | 0.398 |
InsulationScore | 0.473 | 0.363 | 0.374 | 0.564 | 0.574 | 0.575 | 0.243 | 0.133 | 0.144 | 0.334 | 0.344 | 0.345 |
Matryoshka | 0.472 | 0.356 | 0.371 | 0.586 | 0.588 | 0.563 | 0.242 | 0.126 | 0.141 | 0.356 | 0.358 | 0.333 |
MrTADFinder | 0.413 | 0.314 | 0.324 | 0.446 | 0.467 | 0.627 | 0.183 | 0.084 | 0.095 | 0.236 | 0.237 | 0.397 |
MSTD | 0.487 | 0.357 | 0.378 | 0.539 | 0.556 | 0.578 | 0.257 | 0.127 | 0.158 | 0.309 | 0.336 | 0.348 |
OnTAD | 0.575 | 0.429 | 0.448 | 0.683 | 0.677 | 0.618 | 0.345 | 0.199 | 0.218 | 0.453 | 0.447 | 0.388 |
Spectral | 0.389 | 0.307 | 0.316 | 0.445 | 0.447 | 0.617 | 0.159 | 0.077 | 0.086 | 0.215 | 0.217 | 0.387 |
SpectralTAD | 0.509 | 0.387 | 0.406 | 0.582 | 0.609 | 0.624 | 0.279 | 0.157 | 0.176 | 0.352 | 0.379 | 0.394 |
TADBD | 0.492 | 0.372 | 0.384 | 0.573 | 0.585 | 0.654 | 0.262 | 0.142 | 0.154 | 0.344 | 0.355 | 0.424 |
TADbit | 0.559 | 0.398 | 0.422 | 0.718 | 0.755 | 0.608 | 0.329 | 0.168 | 0.192 | 0.488 | 0.546 | 0.378 |
TADpole | 0.483 | 0.367 | 0.376 | 0.596 | 0.594 | 0.653 | 0.351 | 0.137 | 0.144 | 0.365 | 0.360 | 0.419 |
TADtree | 0.482 | 0.365 | 0.375 | 0.594 | 0.592 | 0.651 | 0.352 | 0.135 | 0.145 | 0.364 | 0.362 | 0.421 |
TopDom | 0.485 | 0.432 | 0.457 | 0.665 | 0.656 | 0.585 | 0.255 | 0.202 | 0.227 | 0.435 | 0.426 | 0.355 |