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Table 8 TAD boundaries’ True Positive Rate and False Positive Rate called from the in silico dataset

From: A comparison of topologically associating domain callers over mammals at high resolution

  True Positive Rate (TPR) False Positive Rate (FPR)
Average Max Min Average Max Min
Armatus 0.708 0.917 0.462 0.192 0.438 0.041
Arrowhead 0.218 0.35 0.141 0.586 0.703 0.444
CaTCH 0.194 0.471 0.044 0.052 0.375 0
CHAC 0.355 0.5 0.233 0.047 0.179 0
CHDF 0.965 1 0.81 0.381 0.517 0.237
ClusterTAD 0.354 0.453 0.244 0.153 0.375 0
deDoc 0.497 0.632 0.372 0.28 0.46 0.068
DI 0.113 0.198 0.041 0.864 0.95 0.754
EAST 0.26 0.343 0.014 0.539 0.636 0.417
GMAP 0.255 0.412 0.136 0.425 0.6 0.182
GRiNCH 0.341 0.504 0.217 0.327 0.562 0.113
HiCExplorer 0.877 0.949 0.709 0.002 0.036 0
HiCKey 0.316 0.429 0.215 0.018 0.089 0.012
HiCseg 0.275 0.406 0.181 0.006 0.071 0
IC-Finder 0.946 1 0.848 0.077 0.158 0.025
InsulationScore 0.09 0.203 0.024 0.636 0.875 0.333
Matryoshka 0.706 0.875 0.5 0.332 0.606 0.127
MrTADFinder 0.752 0.895 0.557 0.337 0.594 0.107
MSTD 0.264 0.383 0.174 0.053 0.211 0
OnTAD 0.429 0.487 0.367 0.014 0.094 0
Spectral 0.182 0.425 0.058 0.785 0.887 0.571
SpectralTAD 0.869 0.956 0.684 0.213 0.367 0.089
TADBD 0.482 0.5 0.38 0 0 0
TADbit 0.452 0.571 0.304 0.478 0.653 0.313
TADpole 0.431 0.522 0.345 0.216 0.521 0.128
TADtree 0.961 1 0.785 0.001 0.016 0
TopDom 0.708 0.917 0.462 0.192 0.438 0.041
  1. Bold numbers show the leading result for every column