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Table 2 Comparison of integration metrics between Cell Ranger and REMS pipeline. 0 indicates no integration and 1 indicates full integration

From: Expression-based species deconvolution and realignment removes misalignment error in multispecies single-cell data

Data type

kBET

LISI

Cell ranger

REMS

Difference

Cell ranger

REMS

Difference

mIO04

0.80

0.80

0.00

0.95

0.96

0.00

hGO03

0.11

0.84

0.73

0.91

0.94

0.03

hLT02

0.25

0.36

0.10

0.92

0.95

0.03

T cell (merged)

0.91

0.01

− 0.90

0.91

0.94

0.04

Macrophage

0.62

0.91

0.29

0.92

0.95

0.03

Ciliated

0.32

0.57

0.25

0.93

0.93

0.01

Neutrophil

0.80

0.99

0.19

0.95

0.95

-0.01

Monocyte

0.92

0.98

0.07

0.94

0.96

0.02

Endothelial_1

0.99

0.97

− 0.03

0.93

0.96

0.03

Mast

0.98

0.97

− 0.01

0.92

0.97

0.04

Endothelial_2

0.99

0.97

− 0.02

0.97

0.94

-0.02

Alveolar Type 2

0.94

0.98

0.03

0.94

0.97

0.03