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Table 1 The species and the related annotations/resources used in this study

From: CircMiMi: a stand-alone software for constructing circular RNA-microRNA-mRNA interactions across species

Species

Annotation/resource

circRNA-miRNA

miRNA-mRNA

E

G

EP

EM

mB

mR

ENC

mIB

mDB

ENC

Arabidopsis thaliana

  

V

 

V

V

 

V

  

Bombyx mori

   

V

V

V

 

V

  

Bos taurus

V

   

V

V

 

V

  

Caenorhabditis elegans

V

  

V

V

V

 

V

  

Canis familiaris

V

   

V

V

 

V

V

 

Danio rerio

V

   

V

V

 

V

  

Drosophila melanogaster

V

   

V

V

 

V

  

Gallus gallus

V

   

V

V

 

V

V

 

Homo sapiens

V

V

  

V

V

V

V

V

V

Mus musculus

V

V

  

V

V

V

V

V

V

Oryza sativa

  

V

 

V

V

 

V

  

Oryzias latipes

V

   

V

V

 

V

  

Ovis aries

V

   

V

V

 

V

  

Rattus norvegicus

V

   

V

V

 

V

V

 

Sus scrofa

V

   

V

V

 

V

  

Taeniopygia guttata

V

   

V

V

 

V

  

Xenopus tropicallis

V

   

V

V

 

V

  
  1. E, Ensembl; G, GENCODE; EP, Ensembl Plants; EM, Ensembl Metazoa; mB, miRbase; mR, miRanda; ENC, ENCORI; mTB, miRTarBase; mDB, miRDB
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BMC Bioinformatics

ISSN: 1471-2105

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