Table 2 The effect of the minimum leaf size on the assembly of the simulated C. elegans data
Min leaf size (% of reads) | # of contigs | NGA50 (bp) | Genome fraction | Misassemblies | BUSCO Complete (%) | Reads mapped (%) | Runtime (min) | Peak memory (MB) |
|---|---|---|---|---|---|---|---|---|
0.1% | 42 | 3,901,186 | 99.699 | 11 | 97.8 | 99.78 | 60 | 1564 |
0.5% | 34 | 4,282,525 | 99.564 | 11 | 93.4 | 99.76 | 55 | 487 |
1.0% | 30 | 4,274,710 | 99.592 | 9 | 93.4 | 99.77 | 53 | 901 |
1.5% | 31 | 5,901,436 | 99.595 | 14 | 97.2 | 99.78 | 51 | 1334 |
2.0% | 37 | 4,691,641 | 99.604 | 15 | 93.5 | 99.77 | 53 | 1776 |
2.5% | 38 | 3,900,976 | 99.568 | 12 | 93.3 | 99.78 | 54 | 2226 |
5.0% | 39 | 5,335,812 | 99.571 | 16 | 98.1 | 99.78 | 40 | 3954 |