Table 3 The effect of the minimum leaf size on the assembly of the real P. pungitius data. The length of the scaffold level reference assembly (GCA_902500615.3) is 466 Mbp
Min leaf size (% of reads) | # of contigs | N50 (bp) | Total length (bp) | BUSCO complete (%) | Reads mapped (%) | Runtime (h) | Peak memory (MB) |
|---|---|---|---|---|---|---|---|
0.1% | 1945 | 918,119 | 453,155,823 | 88.0 | 92.6 | 13.34 | 6,212 |
0.5% | 1084 | 1,799,563 | 489,091,741 | 91.3 | 93.52 | 14.3 | 8,289 |
1.0% | 884 | 1,877,796 | 511,024,231 | 92.1 | 93.95 | 13.88 | 11,680 |
1.5% | 790 | 2,119,727 | 503,905,067 | 92.5 | 93.91 | 13.44 | 16,001 |
2.0% | 779 | 2,059,129 | 499,019,519 | 91.7 | 93.82 | 11.98 | 17,884 |
2.5% | 784 | 2,027,447 | 481,429,790 | 91.7 | 93.65 | 17.95 | 22,713 |