Table 9 Comparison of HGGA, miniasm, and Kermit on the H. sapiens data with real reads and simulated genetic linkage map
Method | # of contigs | NGA50 (bp) | Genome fraction | Misassemblies | BUSCO complete (%) | Reads mapped (%) | Runtime (h) | Peak memory (MB) |
|---|---|---|---|---|---|---|---|---|
Miniasm | 8,789 | 692,902 | 89.761 | 3,669 | 76.5 | 61.37 | 237.84 | 565,309 |
Kermit | 4,503 | 1,050,164 | 90.069 | 762 | 77.9 | 60.65 | 239.29 | 565,307 |
HGGA | 2,204 | 6,814,538 | 93.181 | 3,004 | 86.5 | 70.45 | 37.46 | 69,492 |