Table 2 Comparison with standard outlier detection and unsupervised clustering methods
From: Gene expression data classification using topology and machine learning models
Dataset | Decision tree | Naive Bayes | ||||
|---|---|---|---|---|---|---|
Local outlier factor | DBSCAN | Topo-curated cohort | Local outlier factor | DBSCAN | Topo-curated cohort | |
Droso breeding | 32.14 | – | 79.34 | 57.14 | – | 42.24 |
Droso parasitod | 36.84 | 100 | 83.50 | 47.36 | 66.67 | – |
Mouse E Coli | 30.91 | 21.05 | 89.29 | 40.00 | 21.05 | 59.21 |
Mouse prion | 35.89 | 39.53 | 61.62 | 39.74 | 39.53 | 57.84 |
Mouse liver cancer | 46.67 | 56.21 | 72.95 | 60.00 | 56.52 | 72.32 |
Human bowel disease | 17.74 | 19.41 | 51.09 | 48.39 | 53.40 | – |