Table 1 Number of viruses included in each label and degree of composition compared to total virus to be analysed, type and distribution of variants included in each label, and number of viruses included in the label by year
From: NGS data vectorization, clustering, and finding key codons in SARS-CoV-2 variations
Labels | Variant3 | Year | Total | |||
|---|---|---|---|---|---|---|
2,019 | 2,020 | 2,021 | Count | |||
1 | Not Known/NCBI | – | 2,715 | – | 2,715 | 2,715 |
4 | Not Known/NCBI | – | 1,908 | 1 | 1,909 | 1,909 |
6 | Not Known/GISAID | – | 141 | 5 | 146 | 2,229 |
Not Known/NCBI | 12 | 2,071 | – | 2,083 | ||
9 | Delta | – | – | 1 | 1 | 16,896 |
Not Known/GISAID | – | 1,581 | 892 | 2,473 | ||
Not Known/NCBI | – | 14,202 | 220 | 14,422 | ||
42 | Not Known/GISAID | – | 9 | 3 | 12 | 1,346 |
Not Known/NCBI | – | 1,325 | 9 | 1,334 | ||
61 | Delta | – | – | 19 | 19 | 2,550 |
Not Known/GISAID | – | 4 | 2,288 | 2,292 | ||
Not Known/NCBI | – | 233 | 6 | 239 | ||
90 | 490R-GH | – | – | 1 | 1 | 3,886 |
Delta | – | 2 | 1,162 | 1,164 | ||
Not Known/GISAID | – | 28 | 2,266 | 2,294 | ||
Not Known/NCBI | – | 404 | 23 | 427 | ||
96 | Alpha | – | – | 10 | 10 | 1,147 |
Delta | – | – | 18 | 18 | ||
Not Known/GISAID | – | 30 | 962 | 992 | ||
Not Known/NCBI | – | 120 | 7 | 127 | ||
104 | Delta | – | – | 769 | 769 | 5,024 |
Not Known/GISAID | – | 165 | 3,766 | 3,931 | ||
Not Known/NCBI | – | 276 | 46 | 322 | ||
Omicron | – | – | 2 | 2 | ||
121 | Delta | – | – | 569 | 569 | 3,034 |
Not Known/GISAID | – | – | 2,465 | 2,465 | ||
124 | Delta | – | – | 34 | 34 | 1,306 |
Not Known/GISAID | – | – | 1,272 | 1,272 | ||
125 | Alpha | – | 861 | 1,370 | 2,231 | 4,447 |
Delta | – | – | 476 | 476 | ||
Not Known/GISAID | – | 14 | 1,620 | 1,634 | ||
Not Known/NCBI | – | 48 | 58 | 106 | ||
130 | Delta | – | – | 21 | 21 | 1,260 |
Not Known/GISAID | – | – | 1,239 | 1,239 | ||
134 | Delta | – | – | 234 | 234 | 1,619 |
Not Known/GISAID | – | – | 1,385 | 1,385 | ||
138 | Delta | – | – | 112 | 112 | 1,219 |
Not Known/GISAID | – | – | 1,107 | 1,107 | ||
140 | Delta | – | – | 18,411 | 18,411 | 22,761 |
Not Known/GISAID | – | – | 4,350 | 4,350 | ||
141 | Delta | – | – | 821 | 821 | 2,800 |
Not Known/GISAID | – | – | 1,977 | 1,977 | ||
Not Known/NCBI | – | 1 | 1 | 2 | ||
142 | Delta | – | – | 3,637 | 3,637 | 9,165 |
Not Known/GISAID | – | – | 5,528 | 5,528 | ||
148 | Delta | – | – | 51 | 51 | 1,165 |
Not Known/GISAID | – | – | 1,114 | 1,114 | ||
149 | Delta | – | – | 744 | 744 | 4,597 |
Not Known/GISAID | – | – | 3,853 | 3,853 | ||
150 | Delta | – | – | 857 | 857 | 1,431 |
Not Known/GISAID | – | – | 574 | 574 | ||
153 | Delta | – | – | 1,802 | 1,802 | 2,342 |
Not Known/GISAID | – | 1 | 539 | 540 | ||
159 | Delta | – | – | 316 | 316 | 1,229 |
Not Known/GISAID | – | – | 913 | 913 | ||
165 | Delta | – | – | 1,049 | 1,049 | 2,303 |
Not Known/GISAID | – | – | 1,254 | 1,254 | ||
170 | Delta | – | 1 | 548 | 549 | 1,656 |
Not Known/GISAID | – | 1 | 1,097 | 1,098 | ||
Not Known/NCBI | – | 6 | 3 | 9 | ||
174 | Delta | – | – | 194 | 194 | 1,130 |
Not Known/GISAID | – | – | 936 | 936 | ||
178 | Delta | – | – | 1,606 | 1,606 | 2,076 |
Not Known/GISAID | – | – | 470 | 470 | ||
180 | Delta | – | – | 225 | 225 | 1,482 |
Not Known/GISAID | – | – | 1,257 | 1,257 | ||
185 | Delta | – | – | 962 | 962 | 1,371 |
Not Known/GISAID | – | – | 409 | 409 | ||
196 | Delta | – | – | 1,486 | 1,486 | 1,967 |
Not Known/GISAID | – | – | 481 | 481 | ||
212 | Delta | – | – | 330 | 330 | 1,595 |
Not Known/GISAID | – | – | 1,263 | 1,263 | ||
Not Known/NCBI | – | 2 | – | 2 | ||
226 | Delta | – | – | 13 | 13 | 1,125 |
Not Known/GISAID | – | – | 1,112 | 1,112 | ||
232 | Delta | – | – | 257 | 257 | 1,253 |
Not Known/GISAID | – | – | 996 | 996 | ||
240 | Delta | – | – | 4,266 | 4,266 | 4,999 |
Not Known/GISAID | – | – | 733 | 733 | ||
244 | Alpha | – | – | 9 | 9 | 1,226 |
Delta | – | – | 1,077 | 1,077 | ||
Not Known/GISAID | – | 1 | 133 | 134 | ||
Not Known/NCBI | – | 3 | 1 | 4 | ||
Omicron | – | – | 2 | 2 | ||
469 | Delta | – | – | 2,010 | 2,010 | 2,047 |
Not Known/GISAID | – | – | 37 | 37 | ||
536 | 490R-GH | – | – | 111 | 111 | 127 |
Not Known/GISAID | – | – | 16 | 16 | ||
596 | Delta | – | – | 1,368 | 1,368 | 1,509 |
Not Known/GISAID | – | – | 133 | 133 | ||
Omicron | – | – | 8 | 8 | ||
616 | Delta | – | – | 1,230 | 1,230 | 1,232 |
Omicron | – | – | 2 | 2 | ||
650 | Omicron | – | – | 814 | 814 | 814 |
651 | Omicron | – | – | 398 | 398 | 398 |