NGS data vectorization, clustering, and finding key codons in SARS-CoV-2 variations

BMC Bioinformatics

Table 3 Codons according to the index number: The codon number shown in each graph in Figs. 4 and 5 indicates the codon corresponding to the index number in the table

Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon
1	UUU	12	AUG	23	CCA	34	UAC	45	GAA	56	AGA
2	UUC	13	GUU	24	CCG	35	CAU	46	GAG	57	AGG
3	UUA	14	GUC	25	ACU	36	CAC	47	UGU	58	GGU
4	UUG	15	GUA	26	ACC	37	CAA	48	UGC	59	GGC
5	CUU	16	GUG	27	ACA	38	CAG	49	UGG	60	GGA
6	CUC	17	UCU	28	ACG	39	AAU	50	CGU	61	GGG
7	CUA	18	UCC	29	GCU	40	AAC	51	CGC
8	CUG	19	UCA	30	GCC	41	AAA	52	CGA
9	AUU	20	UCG	31	GCA	42	AAG	53	CGG
10	AUC	21	CCU	32	GCG	43	GAU	54	AGU
11	AUA	22	CCC	33	UAU	44	GAC	55	AGC

ISSN: 1471-2105

Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon
1	UUU	12	AUG	23	CCA	34	UAC	45	GAA	56	AGA
2	UUC	13	GUU	24	CCG	35	CAU	46	GAG	57	AGG
3	UUA	14	GUC	25	ACU	36	CAC	47	UGU	58	GGU
4	UUG	15	GUA	26	ACC	37	CAA	48	UGC	59	GGC
5	CUU	16	GUG	27	ACA	38	CAG	49	UGG	60	GGA
6	CUC	17	UCU	28	ACG	39	AAU	50	CGU	61	GGG
7	CUA	18	UCC	29	GCU	40	AAC	51	CGC
8	CUG	19	UCA	30	GCC	41	AAA	52	CGA
9	AUU	20	UCG	31	GCA	42	AAG	53	CGG
10	AUC	21	CCU	32	GCG	43	GAU	54	AGU
11	AUA	22	CCC	33	UAU	44	GAC	55	AGC

Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon
1	UUU	12	AUG	23	CCA	34	UAC	45	GAA	56	AGA
2	UUC	13	GUU	24	CCG	35	CAU	46	GAG	57	AGG
3	UUA	14	GUC	25	ACU	36	CAC	47	UGU	58	GGU
4	UUG	15	GUA	26	ACC	37	CAA	48	UGC	59	GGC
5	CUU	16	GUG	27	ACA	38	CAG	49	UGG	60	GGA
6	CUC	17	UCU	28	ACG	39	AAU	50	CGU	61	GGG
7	CUA	18	UCC	29	GCU	40	AAC	51	CGC
8	CUG	19	UCA	30	GCC	41	AAA	52	CGA
9	AUU	20	UCG	31	GCA	42	AAG	53	CGG
10	AUC	21	CCU	32	GCG	43	GAU	54	AGU
11	AUA	22	CCC	33	UAU	44	GAC	55	AGC

Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon	Index	Codon
1	UUU	12	AUG	23	CCA	34	UAC	45	GAA	56	AGA
2	UUC	13	GUU	24	CCG	35	CAU	46	GAG	57	AGG
3	UUA	14	GUC	25	ACU	36	CAC	47	UGU	58	GGU
4	UUG	15	GUA	26	ACC	37	CAA	48	UGC	59	GGC
5	CUU	16	GUG	27	ACA	38	CAG	49	UGG	60	GGA
6	CUC	17	UCU	28	ACG	39	AAU	50	CGU	61	GGG
7	CUA	18	UCC	29	GCU	40	AAC	51	CGC
8	CUG	19	UCA	30	GCC	41	AAA	52	CGA
9	AUU	20	UCG	31	GCA	42	AAG	53	CGG
10	AUC	21	CCU	32	GCG	43	GAU	54	AGU
11	AUA	22	CCC	33	UAU	44	GAC	55	AGC