FragGeneScanRs: faster gene prediction for short reads

BMC Bioinformatics

Table 1 Average execution time and standard deviation for various read lengths

Average read length	FGS Mean [s]	FGS+ Mean [s]	FGSrs Mean [s]
100	4.843 ± 0.018	0.491 ± 0.002	0.396 ± 0.004
200	5.966 ± 0.028	0.842 ± 0.001	0.748 ± 0.002
300	7.020 ± 0.011	1.168 ± 0.001	1.103 ± 0.012
400	8.073 ± 0.020	1.487 ± 0.002	1.451 ± 0.002
500	9.109 ± 0.016	1.803 ± 0.004	1.795 ± 0.002
600	10.122 ± 0.021	2.115 ± 0.002	2.154 ± 0.015
700	11.137 ± 0.026	2.448 ± 0.007	2.505 ± 0.008
800	12.196 ± 0.020	2.790 ± 0.005	2.859 ± 0.010
900	13.218 ± 0.023	3.132 ± 0.003	3.198 ± 0.010
1000	14.309 ± 0.255	3.474 ± 0.018	3.547 ± 0.005
2000	24.443 ± 0.025	7.021 ± 0.020	7.052 ± 0.024
3000	34.655 ± 0.038	10.913 ± 0.014	10.545 ± 0.025
4000	45.037 ± 0.051	14.841 ± 0.020	14.042 ± 0.022
5000	55.315 ± 0.059	18.756 ± 0.034	17.525 ± 0.039
6000	65.537 ± 0.118	22.997 ± 0.298	21.007 ± 0.028
7000	75.791 ± 0.058	27.099 ± 0.080	24.521 ± 0.068
8000	86.172 ± 0.202	31.440 ± 0.051	27.980 ± 0.043
9000	96.354 ± 0.347	35.858 ± 0.040	31.489 ± 0.055
10,000	106.509 ± 0.104	40.513 ± 0.071	34.962 ± 0.050

ISSN: 1471-2105