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Fig. 2 | BMC Bioinformatics

Fig. 2

From: NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects

Fig. 2

Analysis of A. thaliana wild type nuclei with NODeJ. Results obtained from Arpòn et al. [14] describing chromocenters from isolated wild type nuclei (n=212) extracted from whole plants (Additional file 1). A–D. Histograms of chromocenters and nucleus characteristics. The histograms show the repartition of nuclear volume (A), the chromocenter volume (B), the chromocenter number per nucleus (C) and their distance to the nuclear envelope (D). The segmentation of the nuclei was obtained using NucleusJ2.0 with default parameters [9]. Histograms were made using various R packages [17, 18] (Additional file 2 and 3 describe the computed parameters)

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