Table 1 MMDs of the CyTOF data before and after being calibrated by individual methods
From: Joint deep learning for batch effect removal and classification toward MALDI MS based metabolomics
Raw | ComBat | Ratio_G | fSVA | ResNet | NormAE | Ours | In Batch 1 | In Batch 2 | |
|---|---|---|---|---|---|---|---|---|---|
Patient 1 | 0.243 ± 0.010 | 0.167 ± 0.006 | 0.243 ± 0.010 | – | 0.116 ± 0.008 | 0.113 ± 0.005 | 0.067 ± 0.005 | 0.053 ± 0.005 | 0.057 ± 0.005 |
Patient 2 | 0.230 ± 0.010 | 0.139 ± 0.005 | 0.230 ± 0.010 | 0.158 ± 0.007 | 0.120 ± 0.009 | 0.131 ± 0.007 | 0.092 ± 0.005 | 0.065 ± 0.006 | 0.064 ± 0.005 |