Fig. 2

Overview of analyses conducted across all subcontexts in three different contexts (i.e., tissues, cell lines, and cell types). At the protein-level, patterns surrounding each single node are investigated ("Analyses at the protein-level" section). The network-level analysis focuses on the relations between nodes (or node pairs) ("Analyses at the network-level" section) and the pathway-level analysis leverages defined node and edge sets to gain insights on context-specific co-expression networks ("Mapping co-expression networks to pathway knowledge" section)