From: Using BERT to identify drug-target interactions from whole PubMed
BERT model | Predicted as drug-target articles | Articles containing drugs or proteins on PubTator | Articles containing both drugs and proteins on PubTator |
---|---|---|---|
BERT | 688,206 | 682,150 | 342,902 |
SciBERT | 594,999 | 589,999 | 321,831 |
BioBERT | 636,091 | 630,132 | 340,638 |
BioMed-RoBERTa | 725,748 | 720,030 | 385,015 |
BlueBERT | 570,284 | 564,220 | 297,834 |
Majority voting | 597,844 | 592,789 | 316,794 |