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Table 1 Overview of datasets used in this study

From: Evaluation of classification in single cell atac-seq data with machine learning methods

Dataset No. of cells No. of populations Description Protocol Source
Corces2016 575 4 Human immune cell Illumina NextSeq 500 [14]
Buenrostro2018 2034 10 Human hematopoietic system cell Illumina NextSeq 500 [15]
10 × PBMCs v1 3917(2927 labeled) 7 Peripheral blood mononuclear cell 10 × Chromium Next GEM Single Cell ATAC Reagent Kits v1.1 https://support.10xgenomics.com/single-cell-atac/datasets/1.2.0/atac_pbmc_5k_nextgem
10 × PBMCs Next Gem 4585(3670 labeled) 7 Peripheral blood mononuclear cell 10 × Chromium Single Cell ATAC Reagent Kits https://support.10xgenomics.com/single-cell-atac/datasets/1.2.0/atac_pbmc_5k_v1