Fig. 3
From: rprimer: an R/bioconductor package for design of degenerate oligos for sequence variable viruses
Visual summary of the design of Assay A. The workflow and function calls are displayed to the left and the output from the generic plotData function to the right. Top: Consensus profile from the input alignment. High identity in combination with low gap proportion indicate high sequence conservation. Dots show the value at each position and black lines represent centred running averages. The highlighted area indicates target regions of the candidate assays (added after the design was completed). Middle: All oligo candidates. Bottom: All assay candidates