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Table 1 CancerNet’s performance in detecting the tissue of origin of 33 cancers

From: CancerNet: a unified deep learning network for pan-cancer diagnostics

Class

Precision

Recall

F1

ACC

0.99925

0.999249

0.999227

BLCA

0.998525

0.998498

0.998507

BRCA

0.998498

0.998498

0.998498

CESC

0.997868

0.997748

0.997784

CHOL

0.998248

0.997748

0.997973

COAD

0.98915

0.989489

0.989229

DLBC

0.998949

0.998874

0.998903

ESCA

0.989043

0.988739

0.988885

GBM

0.991661

0.991742

0.991697

HNSC

0.991985

0.992117

0.99203

KICH

0.999625

0.999625

0.999618

KIRC

0.997748

0.997748

0.997748

KIRP

0.997793

0.997748

0.997765

LAML

0.999625

0.999625

0.999621

LGG

0.991407

0.991366

0.991386

LIHC

0.997935

0.997748

0.997795

LUAD

0.997125

0.996997

0.997033

LUSC

0.994668

0.994745

0.994648

MESO

0.998875

0.998874

0.998829

OV

0.997384

0.997372

0.997377

PAAD

0.997312

0.997372

0.997321

PCPG

0.999635

0.999625

0.999627

PRAD

0.996604

0.996622

0.996567

READ

0.993231

0.99024

0.991447

SARC

0.998109

0.998123

0.998115

SKCM

0.99817

0.998123

0.998138

STAD

0.993135

0.993243

0.993174

TGCT

1

1

1

THCA

0.99852

0.998498

0.998506

THYM

0.997281

0.997372

0.997296

UCEC

0.993519

0.993619

0.99353

UCS

0.996655

0.996246

0.996433

UVM

0.999625

0.999625

0.999619

NORM

0.987758

0.987613

0.987665

  1. A normal class (NORM) is also included. The performance was assessed using the accuracy metrics precision, recall and F1-measure
  2. ACC—Adrenocortical carcinoma, BLCA—Bladder urothelial carcinoma, BRCA—Breast invasive carcinoma, CESC—Cervical squamous cell carcinoma and endocervical adenocarcinoma, CHOL—Cholangiocarcinoma, COAD—Colon adenocarcinoma, DLBC—Lymphoid neoplasm diffuse large B-cell lymphoma, ESCA—Esophageal carcinoma, GBM—Glioblastoma multiforme, HNSC—Head and neck squamous cell carcinoma, KICH—Kidney chromophobe, KIRC—Kidney renal clear cell carcinoma, KIRP—Kidney renal papillary cell carcinoma, LAML—Acute myeloid leukemia, LGG—Brain lower grade glioma, LIHC—Liver hepatocellular carcinoma, LUAD—Lung adenocarcinoma, LUSC—Lung squamous cell carcinoma, MESO—Mesothelioma, OV—Ovarian serous cystadenocarcinoma, PAAD—Pancreatic adenocarcinoma, PCPG—Pheochromocytoma and paraganglioma, PRAD—Prostate adenocarcinoma, READ—Rectum adenocarcinoma, SARC—Sarcoma, SKCM—Skin cutaneous melanoma, STAD—Stomach adenocarcinoma, TGCT—Testicular germ cell tumors, THCA—Thyroid carcinoma, THYM—Thymoma, UCEC—Uterine corpus endometrial carcinoma, UCS—Uterine carcinosarcoma, UVM—Uveal melanoma, NORM—Normal (non-cancer)