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Table 2 Parameters of the Poisson distribution for reads carrying alleles A, a, and error reads, depending on the true genotypes \({\mathrm{G}}^{\mathrm{ij}}\) and the error rate \({\upvarepsilon }_{\mathrm{j}}\)

From: Moment estimators of relatedness from low-depth whole-genome sequencing data

  \({G}^{ij}=0\)
Genotype AA
\({G}^{ij}=1\)
Genotype Aa
\({G}^{ij}=2\)
Genotype aa
\({\rho }_{A}^{ij}\) \(1-{\varepsilon }_{j}\) \(\frac{1}{2}\left(1-{\varepsilon }_{j}\right)\)+\({\frac{1}{6}\varepsilon }_{j}\) \({\frac{1}{3}\varepsilon }_{j}\)
\({\rho }_{a}^{ij}\) \({\frac{1}{3}\varepsilon }_{j}\) \(\frac{1}{2}\left(1-{\varepsilon }_{j}\right)\)+\({\frac{1}{6}\varepsilon }_{j}\) \(1-{\varepsilon }_{j}\)
\({\rho }_{\varepsilon }^{ij}\) \({\frac{2}{3}\varepsilon }_{j}\) \({\frac{2}{3}\varepsilon }_{j}\) \({\frac{2}{3}\varepsilon }_{j}\)