Table 1 Features of tools predicting the impact of alternative splicing on proteins functions
From: SAPFIR: A webserver for the identification of alternative protein features
Tool | Interface | Resolution | Annotation | Enrichment | Species |
|---|---|---|---|---|---|
Exon ontology | Web server | Exon | Exon ontology terms | Fixed controls | Human |
IsoformSwitchAnalyzeR | R package | Isoform | Gain or loss of features | User defined controls | User defined genome |
tappAS | Standalone | Isoform | Domains, motifs, sites | User defined controls | Human, mouse, Arabidopsis, fly, and maize |
SAPFIR | Web server | User defined | InterProScan terms | User defined controls | Human and mouse |