Fig. 2

Overview of genotype data modules. The convert-mac module (top) converts the MaCH/minimac dosage files and converts them into plink compatible files; bim, bed and fam files. The combine-datasets module (middle) allows the user to combine multiple datasets together, however, this data must be harmonised before using this module. The correct-files module is the final step in the process, which updates the plink files to contain the correct information as some information is lost during the conversion process