Table 3 Compressed size under different references
From: SparkGC: Spark based genome compression for large collections of genomes
Chromosome | Original size (MB) | Method | Compressed size (MB) under different references | AVG | SD | |||||
|---|---|---|---|---|---|---|---|---|---|---|
HG13 | HG16 | K131 | YH | Huref | HG00096 | |||||
Chr1 | 264,994 | HiRGC | 2474 | 1313 | 828 | 750 | 1026 | 480 | 1145 | 647 |
SCCG | 2430 | 1284 | 775 | 706 | 986 | 464 | 1107 | 643 | ||
memRGC | 2324 | 1192 | 650 | 593 | 887 | 406 | 1009 | 638 | ||
HRCM | 126 | 140 | 156 | 154 | 151 | 136 | 144 | 11 | ||
SparkGC | 123 | 115 | 130 | 128 | 125 | 115 | 123 | 6 | ||
Chr13 | 122,492 | HiRGC | 333 | 296 | 413 | 394 | 314 | 219 | 328 | 64 |
SCCG | / | 289 | 390 | 375 | 308 | 219 | / | / | ||
memRGC | 288 | 254 | 333 | 319 | 262 | 190 | 274 | 47 | ||
HRCM | 48 | 56 | 66 | 65 | 63 | 57 | 59 | 6 | ||
SparkGC | 44 | 44 | 52 | 52 | 50 | 45 | 48 | 3 | ||