Skip to main content
Fig. 4 | BMC Bioinformatics

Fig. 4

From: Marker-controlled watershed with deep edge emphasis and optimized H-minima transform for automatic segmentation of densely cultivated 3D cell nuclei

Fig. 4

Results comparison on the 12th spheroid. A: the spheroid, B: ground truth, C: CellProfiler segmentation (PQ=0.51), D: U-Net+SWS segmentation (PQ=0.57), E: \(\{C,M_{2DE},S\}\) segmentation (PQ=0.72), F: \(\{C,M_{3DE},S\}\) segmentation (PQ=0.72. The configurations are specified by \(\{w,M,S\}\): w denotes watershed method, \(M \in \{M_{3D},M_{3DE},M_{2DE}\}\), which denotes 3D mask, 3D and 2D edge emphasizing mask, respectively, and \(S \in \{S,-\}\), which refers to use or exclusion of seeds. Colors are arbitrary. The actual height and width of the spheroid are 86 \(\mu\)m and 39 \(\mu\)m, respectively. PQ = Panoptic Quality

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us