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Table 1 Gold Standard overlap. The overlap in terms of proteins and interactions of the high-throughput datasets (HTP) with the low-throughout Gold Standard (LTP_GS), the BioSystems-derived Gold Standard (MP_GS) and Gene Ontology biological process-derived Gold Standards (BP10_GS and BP100_GS) (highest overlaps are shown in bold).

From: Integration of probabilistic functional networks without an external Gold Standard

  

LTP_GS

MP_GS

BP10_GS

BP100_GS

Proteins

Gold Standard

5510

2551

5071

4551

(6,018 HTP)

Overlap

5016

2549

4868

4369

 

Overlap %

83.3

42.4

80.9

72.6

Interactions

Gold Standard

50,491

9924

2,947,156

384,450

(507,352 HTP)

Overlap

16,724

1045

174,934

39,200

 

Overlap %

3.3

0.2

34.5

7.73

  1. Total numbers differ slightly from Fig. 2 since only those identifiers that could be mapped between BioSystems and BioGrid are included