Table 4 The enrichment results of the four algorithms in the four real datasets
Dataset | Method | Ratio | Count | BP | CC | MF |
|---|---|---|---|---|---|---|
Term (P-value) | Term (P-value) | Term (P-value) | ||||
Pollen | AMBB | 0.7629 | 621/814 | cytoplasmic translation (1.10E-65) | Cytoplasm (3.00E-74) | structural constituent of ribosome (3.10E-49) |
Bimax | 0.75 | 108/144 | integrin-mediated signaling pathway (1.50E-05) | Membrane (1.00E-07) | ATP binding (1.50E-15) | |
Plaid | 0.9444 | 34/36 | cellular lipid metabolic process (1.60E-06) | Membrane (1.30E-06) | ATPase activity, coupled to transmembrane movement of substances (3.70E-18) | |
QUBIC | 0.8378 | 124/148 | acyl-CoA metabolic process (9.40E-15) | mitochondrial matrix (1.30E-07) | metalloendopeptidase activity (1.10E-18) | |
Buettner | AMBB | 0.7358 | 518/704 | cell division (1.70E-28) | Nucleoplasm (6.70E-76) | RNA binding (2.40E-60) |
Bimax | 0.6222 | 28/45 | Ossification (1.50E-04) | Nucleus (2.00E-04) | transmembrane transporter activity (9.50E-03) | |
Plaid | 0.4848 | 16/33 | Ossification (4.90E-03) | Nucleus (1.90E-03) | nucleotidyltransferase activity (3.00E-02) | |
QUBIC | 0.7321 | 46/51 | negative regulation of apoptotic process (2.70E-03) | cytoplasmic vesicle (1.50E-03) | double-stranded RNA binding (8.00E-03) | |
GDS3715 | AMBB | 0.735 | 294/400 | cytoplasmic translation (9.60E-21) | Cytosol (3.70E-28) | protein binding (1.00E-25) |
Bimax | 0.7769 | 94/121 | inorganic anion transport (2.10E-08) | Membrane (3.40E-07) | ATPase activity, coupled to transmembrane movement of substances (9.10E-22) | |
Plaid | 0.7736 | 41/53 | transmembrane transport (8.60E-11) | ATP-binding cassette (ABC) transporter complex (1.50E-05) | ATPase activity, coupled to transmembrane movement of substances (9.70E-16) | |
QUBIC | 0.8088 | 55/68 | transmembrane transport (2.20E-11) | ATP-binding cassette (ABC) transporter complex (2.25E-05) | ATPase activity, coupled to transmembrane movement of substances (5.90E-17) | |
GSE3904 | AMBB | 0.8723 | 41/47 | structural constituent of ribosome (1.70E-38) | cytosolic ribosome (8.40E-46) | structural constituent of ribosome (1.70E-38) |
Bimax | 0.9474 | 54/57 | transmembrane transport (2.60E-13) | intracellular membrane-bounded organelle (3.00E-04) | ATPase activity, coupled to transmembrane movement of substances (7.50E-25) | |
Plaid | 0.9091 | 30/33 | transmembrane transport (8.20E-22) | integral component of membrane (1.40E-05) | ATPase activity, coupled to transmembrane movement of substances (8.70E-29) | |
QUBIC | 0.828 | 77/93 | transmembrane transport (2.10E-33) | integral component of membrane (1.60E-07) | ATPase activity, coupled to transmembrane movement of substances (1.50E-44) |