A supervised protein complex prediction method with network representation learning and gene ontology knowledge

BMC Bioinformatics

Table 6 Comparison of experimental results using different classification labels on the DIP and HPRD datasets

Dataset	SVC train set	RF train set	Precision	Recall	F-score
DIP	Two categories	Two categories	0.7684	0.4330	0.5539
	Two categories	Three categories	0.8726	0.4112	0.5589
	Three categories	Two categories	0.5562	0.4467	0.4955
	Three categories	Three categories	0.5579	0.4494	0.4978
HPRD	Two categories	Two categories	0.5559	0.7186	0.6268
	Two categories	Three categories	0.7891	0.4966	0.6096
	Three categories	Two categories	0.4485	0.4299	0.4390
	Three categories	Three categories	0.6472	0.2919	0.4023

ISSN: 1471-2105