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Table 9 Eight predicted complexes with low \(P-value\) that don’t match the true complexes on the DIP and HPRD networks

From: A supervised protein complex prediction method with network representation learning and gene ontology knowledge

Dataset

ID

Complex

Match

\(P-value\)

GO_Process

GO_Function

GO_Component

dDIP

1

YER082C YLR222C YCR057C YLR129W

0.21

4.76944e-10

3.56521e-05

2.2827e-09

2

YOR304W YBR245C YER164W

0.25

4.24108e-08

2.88883e-08

7.01017e-07

3

YJL069C YCR057C YGR090W YER082C YDR449C

0.33

7.42936e-10

5.70436e-09

2.91387e-11

4

YHL006C YDR078C YIL132C YLR376C

0.0

3.00595e-12

6.54104e-05

4.55447e-14

HPRD

1

SHC1 EPOR CSF2RB JAK2 LYN PTPN6

0.12

1.00517e-08

1.14531e-06

3.6605e-07

2

GTF2E2 GTF2B GTF2E1 GTF2F2 TBP

0.2

3.43893e-12

1.97181e-14

1.63409e-13

3

MCM10 CDC7 MCM2 CDKN2A

0.1

2.01548e-06

3.66353e-06

1.16493e-05

4

CDH18 CDH9 CDH6

0.0

9.51598e-09

4.37102e-06

3.82459e-09