Table 3 Top 10 up- and down-regulated differentially expressed genes (DEGs) identified by the fused inverse-normal method
From: Fused inverse-normal method for integrated differential expression analysis of RNA-seq data
DEGs (Up) | \({N}_{g}\) | Mean |logFC| | Effect | BH p-value | DEGs (Down) | \({N}_{g}\) | Mean |logFC| | Effect | BH p-value |
|---|---|---|---|---|---|---|---|---|---|
EIF4EBP1 | 10.45 | 3.33 | +++ | \(<1.62\times {10}^{-15}\) | SMAD12 | 11.19 | 4.32 | −−− | \(<1.62\times {10}^{-15}\) |
WEE1 | 10.39 | 4.04 | +++ | \(<1.62\times {10}^{-15}\) | RASGRF2 | 11.10 | 4.19 | −−− | \(<1.62\times {10}^{-15}\) |
VIM | 10.39 | 3.68 | +++ | \(<1.62\times {10}^{-15}\) | DNAJC6 | 11.07 | 3.71 | −−− | \(<1.62\times {10}^{-15}\) |
NUSAP1 | 10.29 | 4.67 | +++ | \(<1.62\times {10}^{-15}\) | SERPINI1 | 10.99 | 4.79 | −−− | \(<1.62\times {10}^{-15}\) |
HJURP | 10.24 | 5.79 | +++ | \(<1.62\times {10}^{-15}\) | ATP1B1 | 10.98 | 3.35 | −−− | \(<1.62\times {10}^{-15}\) |
KIF4A | 10.15 | 4.48 | +++ | \(<1.62\times {10}^{-15}\) | ATP8A1 | 10.91 | 3.95 | −−− | \(<1.62\times {10}^{-15}\) |
KIF20A | 10.12 | 5.80 | +++ | \(<1.62\times {10}^{-15}\) | JAKMIP3 | 10.91 | 4.40 | −−− | \(<1.62\times {10}^{-15}\) |
AURKB | 10.09 | 5.48 | +++ | \(<1.62\times {10}^{-15}\) | MFSD6 | 10.90 | 2.83 | −−− | \(<1.62\times {10}^{-15}\) |
UBE2C | 10.07 | 5.95 | +++ | \(<1.62\times {10}^{-15}\) | DCTN1-AS1 | 10.88 | 5.33 | −−− | \(<1.62\times {10}^{-15}\) |
CCNB2 | 10.04 | 4.63 | +++ | \(<1.62\times {10}^{-15}\) | PRKACB | 10.85 | 2.35 | −−− | \(<1.62\times {10}^{-15}\) |