From: TMbed: transmembrane proteins predicted through language model embeddings
 | β-TMP (57) | α-TMP (571) | Globular (5654) | |||
---|---|---|---|---|---|---|
Recall (%) | FPR (%) | Recall (%) | FPR (%) | Recall (%) | FPR (%) | |
TMbed | 93.8 ± 7.5 | 0.1 ± 0.1 | 97.5 ± 0.7 | 0.5 ± 0.2 | 99.5 ± 0.2 | 2.8 ± 1.2 |
DeepTMHMM | 77.9 ± 12.7 | 0.1 ± 0.1 | 95.8 ± 1.3 | 0.5 ± 0.2 | 99.5 ± 0.2 | 5.9 ± 2.2 |
TMSEG | – | – | 96.5 ± 1.0 | 2.3 ± 0.3 | 97.7 ± 0.3 | 3.5 ± 1.0 |
TOPCONS21 | – | – | 94.2 ± 1.3 | 2.6 ± 0.3 | 97.4 ± 0.3 | 5.8 ± 1.3 |
OCTOPUS1 | – | – | 94.2 ± 1.9 | 9.1 ± 0.7 | 90.9 ± 0.7 | 5.8 ± 1.9 |
Philius1 | – | – | 92.5 ± 1.4 | 2.6 ± 0.2 | 97.4 ± 0.2 | 7.5 ± 1.4 |
PolyPhobius1 | – | – | 97.2 ± 1.1 | 5.3 ± 0.4 | 94.7 ± 0.4 | 2.8 ± 1.1 |
SPOCTOPUS1 | – | – | 97.5 ± 1.6 | 17.2 ± 0.8 | 82.8 ± 0.8 | 2.5 ± 1.6 |
SCAMPI2 (MSA) | – | – | 94.2 ± 1.6 | 5.6 ± 0.3 | 94.4 ± 0.3 | 5.8 ± 1.6 |
CCTOP2 |  |  | 96.1 ± 2.1 | 3.7 ± 0.6 | 96.3 ± 0.6 | 3.9 ± 2.1 |
HMM-TM (MSA)3 | – | – | 97.3 ± 1.6 | 21.4 ± 0.5 | 78.6 ± 0.5 | 2.7 ± 1.6 |
BOCTOPUS2 | 84.0 ± 13.3 | 4.2 ± 0.5 | – | – | 95.8 ± 0.5 | 16.0 ± 13.3 |
BetAware-Deep | 85.1 ± 9.3 | 4.7 ± 0.3 | – | – | 95.3 ± 0.3 | 14.9 ± 9.3 |
PRED-TMBB24 | 88.8 ± 12.1 | 7.1 ± 0.4 | – | – | 92.9 ± 0.4 | 11.2 ± 12.1 |
PROFtmb | 91.9 ± 9.0 | 6.1 ± 0.5 | – | – | 93.9 ± 0.5 | 8.1 ± 9.0 |