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Table 3 Performance comparison with other state-of-art methods on DDIExtraction 2013 dataset

From: IMSE: interaction information attention and molecular structure based drug drug interaction extraction

 

Methods

Precision (%)

Recall (%)

F1-score (%)

CNN-based

SCNN [12]

69.1

65.1

67.0

DCNN [11]

77.2

64.4

70.2

MCCNN [10]

76.0

65.3

70.2

LSTM-based

DLSTM [18]

72.5

71.5

72.0

ASDP-LSTM [20]

74.1

71.8

72.9

Tree-LSTM [37]

77.8

69.6

73.5

ATT-BLSTM [19]

78.4

76.2

77.3

Pretraining-based

BERT [29]

77.90

77.43

77.66

BioBERT [31]

81.1

75.3

78.1

CharacterBERT [32]

79.18

80.38

81.70

ChemicalBERT + AGGCN [38]

83.96

81.82

82.88

DESC_MOL [39]

84.69

82.53

83.60

IMSE (ours)

85.63

85.17

85.16

  1. Bold indicates the highest value of the measured metric in each comparison experiment