Method | Odds ratio (95% CI) | p-value (Fisher’s Exact) |
---|---|---|
DMRscaler | ||
Layer 1: 4 adj CpGs | 7.57 (6.38–8.99) | 1.04e-134 |
Layer 2: 8 adj CpGs | 7.24 (6.07–8.65) | 5.93e-100 |
Layer 3: 16 adj CpGs | 51.99 (30.38–90.33) | 4.34e-77 |
Layer 4: 32 adj CpGs | 160.44 (25.42–6,396.92) | 6.59e-18 |
Layer 5: 64 adj CpGs | 0 (0–319.59) | 1 |
bumphunter | ||
Default: maxGap = 1 kb | 14 (11.18–17.61) | 7.00E-185 |
maxGap = 1 Mb | 15 (11.95–18.94) | 5.36E-193 |
comb-p | ||
dist = 1 kb, step = 100 bp | 2.07 (1.63–2.62) | 5.72E-09 |
dist = 1 Mb, step = 100 kb | 0 (0–Inf) | 1 |
DMRcate | ||
Default: lambda = 1 kb, C = 2 | 1.27 (1.03–1.57) | 0.023608 |
Lambda = 1 Mb, C = 2000 | 0 (0–43.86) | 1 |