Table 2 Pipeline running time
From: Pattern matching for high precision detection of LINE-1s in human genomes
Sample | FASTQ Size | Pre-processing | L1PD |
|---|---|---|---|
(GB) | (min.) | (min.) | |
HG02153 | 3.05 | 93 | 29 |
HG00119 | 3.51 | 129 | 28 |
HG00114 | 8.03 | 198 | 27 |
HG01383 | 8.98 | 235 | 28 |
HG00304 | 9.23 | 227 | 28 |
HG01612 | 9.70 | 250 | 28 |
HG01883 | 15.93 | 354 | 28 |
HG01275 | 19.05 | 399 | 28 |
HG01840 | 29.33 | 642 | 29 |
HG00551 | 30.98 | 686 | 28 |