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Table 3 Methods of generating variable-length k-mers.

From: CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers

Method

k-mer overlap

Vector assignment

splitDNA2vec

no

word2vec

splitDNA2vec-sh

no

random shuffling of the word2vec map from k-mers to embedding vectors

dna2vec

yes

word2vec

  1. Each column shows the name of a method, overlapping between adjacent variable-length k-mers, and the method used for assigning vector elements