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Table 5 Hyper-parameter setting of KEGRU.

From: CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers

hyper-parameter

[17]

this study

k

4, 5, 6

\(2, \ldots , 12\)

stride

\(2, \ldots , 5\)

\(1, \ldots , 5\)

D

50, 100, 150, 200

20, 50

  1. k represents the length of k-mer. In [17], they compared the cases where \(D = 50, 100, 150\), and 200, and reported almost the same scores with \(D = 50, 100\), and 150. Thus, we adopted \(D=50\) as well as our default value \(D=20\)
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BMC Bioinformatics

ISSN: 1471-2105

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