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Fig. 2 | BMC Bioinformatics

Fig. 2

From: SumStatsRehab: an efficient algorithm for GWAS summary statistics assessment and restoration

Fig. 2

A stacked histogram plot—the core plot produced by the “diagnosis” command. It maps all SNPs against their p-value, with the valid portion of SNPs colored blue and invalid SNPs colored red, allowing assessment of the distribution of invalid SNPs by significance. B One of several bar charts produced by the “diagnosis” command. This plot is generated for each bin of the stacked histogram plot A and reports the number of issues that invalidate the SNP entries in a particular bin

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