Table 2 Total % of SNPs removed per GWAS summary statistics file for restoration runs by SumStatsRehab and MungeSumstats
From: SumStatsRehab: an efficient algorithm for GWAS summary statistics assessment and restoration
MungeSumStats | SumStatsRehab | |||||
|---|---|---|---|---|---|---|
Allergies | Blood pressure | CRP | Allergies (%) | Blood pressure (%) | CRP | |
rsID | 6.00% | 12.05% | 11.40% | 0 | 0 | 0% |
Chr | 6.50% | Fail | N/A | 0 | 0 | N/A |
BP | 6.50% | Fail | N/A | 0 | 0 | N/A |
EA | 8.70% | Fail | Fail | 0 | 0 | 0% |
OA | 6.50% | Fail | Fail | 0 | 0 | 0% |
MAF | N/A | N/A | N/A | 0 | 0 | 0% |
t-statistics | N/A | N/A | N/A | 0 | 0 | 0% |
p-value | N/A | N/A | N/A | 0 | 0 | 0% |
StdErr | N/A | N/A | N/A | 0 | 0 | 0% |