Fig. 1
From: Genomic data integration and user-defined sample-set extraction for population variant analysis
Overview of the proposed framework. Our approach involves developing two source-specific data integration modules for the download and transform stages of our pre-existing data integration framework. Integrating 1KGP into our genomic data repository extends the set of data sources supported by GenoSurf and GMQL, two exploratory and data querying software applications. Then, through its API VarSum provides easy summarization of extensive genomic variation data for user-defined populations; the API queries a novel relational database derived from the genomic data repository for improved efficiency. In red are the novel contributions of this work