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Table 4 Filtering capability for TCGA and 1KGP

From: Genomic data integration and user-defined sample-set extraction for population variant analysis

 

Filter samples on

Availability in source

TCGA

1KGP

Metadata

Gender

x

x

Ethnicity

x

x

Population

 

x

Super population

 

x

Health status

x

x

Disease

x

x

Assembly

x

x

DNA source (i.e., LCL/blood)

 

x

Region data

Presence of a specific variant/multiple variants

x

x

Absence of a specific variant/multiple variants

x

x

Presence of any variant inside a specific genomic region

x

x

Presence of two or more specific variants on the same chrom. copy

 

x

Presence of two specific variants on opposite chrom. copies

 

x

Having any germline variant

 

x

Having any somatic variant

x

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