From: Genomic data integration and user-defined sample-set extraction for population variant analysis
 | Filter samples on | Availability in source | |
---|---|---|---|
TCGA | 1KGP | ||
Metadata | Gender | x | x |
Ethnicity | x | x | |
Population | Â | x | |
Super population | Â | x | |
Health status | x | x | |
Disease | x | x | |
Assembly | x | x | |
DNA source (i.e., LCL/blood) | Â | x | |
Region data | Presence of a specific variant/multiple variants | x | x |
Absence of a specific variant/multiple variants | x | x | |
Presence of any variant inside a specific genomic region | x | x | |
Presence of two or more specific variants on the same chrom. copy | Â | x | |
Presence of two specific variants on opposite chrom. copies | Â | x | |
Having any germline variant | Â | x | |
Having any somatic variant | x | Â |