Table 4 Real data application
From: Impact of adaptive filtering on power and false discovery rate in RNA-seq experiments
| Â | No filter | Basic | Mean-based | Max-based | Zero-based | Jaccard |
|---|---|---|---|---|---|---|
Bottomly | 1443 | 1324 (35) | 1488 (24) | 1489 (25) | 1417 (15) | 1371 (34) |
Sultan | - | 2801 (83) | 3511 (11) | 3445 (15) | 3511 14) | 2864 (42) |
Airway | 0 | 1029 (48) | 1554 (60) | 1576 (60) | 1235 (26) | 1612 (57) |
Airway 2 | - | 102 (52) | 275 (80) | 347 (80) | 120 (16) | 197 (54) |
Mouse | 9151 | 8772 (21) | 9173 (6) | 9540 (18) | 9192 (5) | 8593 (28) |
Kidney | 13076 | 13075 (3) | 13282 (5) | 13299 (4) | 11784 (19) | 13072 (2) |
Kidney 2 | 5777 | 6357 (5) | 6357 (2) | 6355 (3) | 6357 (4) | 6355 (3) |
Yuen | Â | Â | Â | Â | Â | Â |
gill vs. mantle | 7932 | 7932 (6) | 9912 (38) | 10340 (48) | 8619 (25) | 7932 (0) |
gill vs. foot | 7534 | 7534 (8) | 9537 (38) | 9685 (32) | 8194 (27) | 7543 (0) |
gill vs. vmass | 6093 | 6093 (4) | 8079 (44) | 8948 (55) | 7023 (23) | 6093 (0) |
mantle vs. foot | 5291 | 5291 (12) | 5802 (41) | 5911 (36) | 5470 (13) | 5291 (0) |
mantle vs. vmass | 2468 | 2468 (6) | 3655 (47) | 4007 (68) | 3034 (23) | 2468 (0) |
foot vs. vmass | 3605 | 3605 (7) | 5054 (35) | 5602 (66) | 4178 (27) | 3605 (0) |