APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data

BMC Bioinformatics

Table 1 Categorized overview of the technical parameters of APA-Scan

Categories	Types	Description
Input data	APA-Scan^peaks	Both 3′-end-seq and RNA-seq data are provided
Input data	APA-Scan^PAS	Only RNA-seq data is provided
Mode	Default	Search for shorter 3′-UTR APA events
Mode	Extended	Search for longer 3′-UTR APA events
Reported list	Default	List the most significant cleavage site for each gene
Reported list	All	List all candidate cleavage sites for each gene

ISSN: 1471-2105