BMC Bioinformatics

Table 2 Comparison among APA-Scan, DaPars and APAtrap on simulated RNA-seq data with two different sequencing depths (30 million reads and 50 million reads)

From: APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data

Reads	Method	AUC	Sensitivity	Specificity
30 M	APA-Scan	0.94	0.83	0.95
	DaPars	0.65	0.33	0.58
	APAtrap	0.73	0.57	0.90
50 M	APA-Scan	0.94	0.83	0.95
	DaPars	0.68	0.41	0.71
	APAtrap	0.75	0.63	0.91

AUC (the area under the ROC curve) score, sensitivity, specificity of the three methods are reported. The best results across the three methods are bold

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